PacBio whole-genome sequencing of the C. remanei PX506 inbred line - SRA

SRX6989873: PacBio whole-genome sequencing of the C. remanei PX506 inbred line
1 PACBIO_SMRT (Sequel) run: 584,000 spots, 5.8G bases, 1.4Gb downloads

Design: The genomic DNA of PX506 strain was isolated using the Genomic-tip 100/G column (Qiagen), the library preparation and PacBio sequenceng were performed by Dovetail genomics (Santa Cruz, CA, USA, https://dovetailgenomics.com)

Submitted by: University of Oregon

Study: Genome assembly of the Caenorhabditis remanei PX506 strain

PRJNA577507 • SRP225597 • All experiments • All runs

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Caenorhabditis remanei is an obligate outcrossing nematode, a member of the 'Elegans' supergroup. We generated a chromosome-level genome assembly of the C. remanei PX506 inbred strain created from a wild isolate from an isopod collected in a forest near Toronto (Canada) using PacBio and Hi-C data, Illumina reads. In addition to publicly available transcriptomic data, we obtained full-transcript sequences (IsoSeq) to annotate the genome.

Sample:

SAMN13028143 • SRS5511979 • All experiments • All runs

Organism: Caenorhabditis remanei

Library:

Name: C.remanei_PX506_PacBio_WGS_run1

Instrument: Sequel

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 584,000 spots, 5.8G bases, 1.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR10276656	584,000	5.8G	1.4Gb	2019-10-15

ID:: 9191922

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